J3_5J4D_049

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_049 not in the Motif Atlas

Homologous match to J3_9DFE_014

Geometric discrepancy: 0.063

The information below is about J3_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5J4D|1|GB|U|2091
5J4D|1|GB|U|2092
5J4D|1|GB|G|2093
*
5J4D|1|GB|C|2196
5J4D|1|GB|U|2197
5J4D|1|GB|A|2198
5J4D|1|GB|A|2199
5J4D|1|GB|C|2205
*
5J4D|1|GB|G|2219
5J4D|1|GB|G|2224
5J4D|1|GB|A|2225
5J4D|1|GB|C|2226
5J4D|1|GB|A|2227
5J4D|1|GB|G|2228

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain JB

50S ribosomal protein L2

Chain OB

50S ribosomal protein L9