J3_5J4D_055
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5J4D|1|A|C|48, 5J4D|1|A|A|50, 5J4D|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_055 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0571
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|A|G|46
5J4D|1|A|C|47
5J4D|1|A|C|48
5J4D|1|A|U|49
5J4D|1|A|A|50
5J4D|1|A|A|51
5J4D|1|A|G|52
*
5J4D|1|A|U|359
5J4D|1|A|A|360
5J4D|1|A|G|361
5J4D|1|A|G|362
5J4D|1|A|A|363
5J4D|1|A|A|364
5J4D|1|A|U|365
5J4D|1|A|C|366
5J4D|1|A|U|367
*
5J4D|1|A|A|393
5J4D|1|A|G|394
5J4D|1|A|C|395
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain OB
- 50S ribosomal protein L9
- Chain UA
- 30S ribosomal protein S12
- Chain YA
- 30S ribosomal protein S16
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