J3_5J4D_067
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 5J4D|1|FB|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_067 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0943
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.6
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
5J4D|1|FB|C|586
5J4D|1|FB|G|587
5J4D|1|FB|G|588
*
5J4D|1|FB|C|651
5J4D|1|FB|U|652
5J4D|1|FB|A|653
5J4D|1|FB|G|654
5J4D|1|FB|A|655
*
5J4D|1|FB|U|751
5J4D|1|FB|G|752
5J4D|1|FB|A|753
5J4D|1|FB|C|754
5J4D|1|FB|G|755
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain CD
- 30S ribosomal protein S15
- Chain ED
- 30S ribosomal protein S17
- Chain VC
- 30S ribosomal protein S8
- Chain ZC
- 30S ribosomal protein S12
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