J3_5J5B_027

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J5B_027 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.0295

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5J5B|1|CA|G|1055
5J5B|1|CA|G|1056
5J5B|1|CA|A|1057
*
5J5B|1|CA|U|1081
5J5B|1|CA|U|1082
5J5B|1|CA|U|1083
5J5B|1|CA|A|1084
5J5B|1|CA|A|1085
5J5B|1|CA|A|1086
5J5B|1|CA|G|1087
*
5J5B|1|CA|C|1102
5J5B|1|CA|A|1103
5J5B|1|CA|C|1104

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CJ

50S ribosomal protein L11