J3_5J5B_062

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5J5B|1|CA|A|504, 5J5B|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J5B_062 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0472

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5J5B|1|CA|G|30
5J5B|1|CA|C|31
*
5J5B|1|CA|G|474
5J5B|1|CA|C|475
5J5B|1|CA|G|476
5J5B|1|CA|A|477
5J5B|1|CA|A|478
5J5B|1|CA|A|479
5J5B|1|CA|A|480
5J5B|1|CA|G|481
5J5B|1|CA|A|482
5J5B|1|CA|A|483
5J5B|1|CA|C|484
*
5J5B|1|CA|G|496
5J5B|1|CA|A|497
5J5B|1|CA|G|498
5J5B|1|CA|U|499
5J5B|1|CA|G|500
5J5B|1|CA|A|501
5J5B|1|CA|A|502
5J5B|1|CA|A|503
5J5B|1|CA|A|504
5J5B|1|CA|A|505
5J5B|1|CA|G|506
5J5B|1|CA|A|507
5J5B|1|CA|A|508
5J5B|1|CA|C|509
5J5B|1|CA|C|510

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein L20

Chain CT

50S ribosomal protein L22

Chain CV

50S ribosomal protein L24