J3_5J7L_011

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5J7L|1|AA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5J7L|1|AA|C|1237
5J7L|1|AA|A|1238
5J7L|1|AA|A|1239
5J7L|1|AA|U|1240
5J7L|1|AA|G|1241
*
5J7L|1|AA|C|1296
5J7L|1|AA|G|1297
5J7L|1|AA|U|1298
5J7L|1|AA|A|1299
5J7L|1|AA|G|1300
5J7L|1|AA|U|1301
5J7L|1|AA|C|1302
5J7L|1|AA|C|1303
*
5J7L|1|AA|G|1334
5J7L|1|AA|U|1335
5J7L|1|AA|C|1336
5J7L|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13