Motif J3_37047.6 Version J3_37047.6 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 1-15 | 2-4 | 2-10 | 3-8 | 4-5 | 6-7 | 9-10 | 11-12 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8CRE_086 | 8CRE | 0.1921 | 2 | CM | SSU rRNA | C | 1456 | A | 1457 | C | 1458 | G | 1460 | * | C | 1520 | G | 1521 | U | 1522 | G | 1523 | C | 1524 | U | 1525 | G | 1527 | * | C | 1558 | G | 1559 | A | 1560 | G | 1561 | cWW | ncsS | tHW | cWW | cSH | ncSH | cWW | |
| 2 | J3_5J7L_011 | 5J7L | 0.1532 | 2 | AA | SSU rRNA | C | 1237 | A | 1238 | A | 1239 | G | 1241 | * | C | 1296 | G | 1297 | U | 1298 | A | 1299 | G | 1300 | U | 1301 | C | 1303 | * | G | 1334 | U | 1335 | C | 1336 | G | 1337 | cWW | ncsS | tHW | cWW | cSH | cWW | ||
| 3 | J3_4LFB_009 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 1237 | A | 1238 | A | 1239 | G | 1241 | * | C | 1296 | C | 1297 | C | 1298 | A | 1299 | G | 1300 | U | 1301 | C | 1303 | * | G | 1334 | C | 1335 | C | 1336 | G | 1337 | cWW | ncsS | tHW | ntHH | cWW | cSH | ncSH | cWW |
| 4 | J3_8P9A_084 | 8P9A | 0.2367 | 2 | sR | SSU rRNA | C | 1470 | A | 1471 | C | 1472 | G | 1474 | * | C | 1533 | G | 1534 | U | 1535 | G | 1536 | C | 1537 | U | 1538 | G | 1540 | * | C | 1571 | G | 1572 | A | 1573 | G | 1574 | cWW | csS | tHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACUG*CGUGCUGG*CGAG | 2 |
| CAAUG*CGUAGUCC*GUCG | 1 |
| CAAUG*CCCAGUUC*GCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACU*GUGCUG*GA | 2 |
| AAU*GUAGUC*UC | 1 |
| AAU*CCAGUU*CC | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Heat map statistics
- Min 0.15 | Avg 0.17 | Max 0.30
Coloring options: