J3_5J7L_030

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J7L_030 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0551

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5J7L|1|CA|C|2091
5J7L|1|CA|U|2092
5J7L|1|CA|G|2093
*
5J7L|1|CA|C|2196
5J7L|1|CA|U|2197
5J7L|1|CA|A|2198
5J7L|1|CA|A|2199
5J7L|1|CA|C|2200
*
5J7L|1|CA|G|2223
5J7L|1|CA|G|2224
5J7L|1|CA|A|2225
5J7L|1|CA|C|2226
5J7L|1|CA|A|2227
5J7L|1|CA|G|2228

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28