J3_5J7L_045

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUA*UAG*CAUAAG

Length

12 nucleotides

Bulged bases

5J7L|1|DA|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5J7L|1|DA|C|2295
5J7L|1|DA|U|2296
5J7L|1|DA|A|2297
*
5J7L|1|DA|U|2321
5J7L|1|DA|A|2322
5J7L|1|DA|G|2323
*
5J7L|1|DA|C|2332
5J7L|1|DA|A|2333
5J7L|1|DA|U|2334
5J7L|1|DA|A|2335
5J7L|1|DA|A|2336
5J7L|1|DA|G|2337

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DF

50S ribosomal protein L5

Chain DP

50S ribosomal protein L18

Chain DX

50S ribosomal protein L27