Motif J3_61124.2 Version J3_61124.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-4 | 5-9 | 6-7 | 7-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_045 | 5J7L | 0.2266 | 2 | DA | LSU rRNA | C | 2295 | U | 2296 | A | 2297 | * | U | 2321 | A | 2322 | G | 2323 | * | C | 2332 | A | 2333 | A | 2335 | G | 2337 | cWW | tWH | cWW | tWW | cWW | |
| 2 | J3_4WF9_008 | 4WF9 | 0.1213 | 2 | X | LSU rRNA | C | 2322 | U | 2323 | C | 2324 | * | G | 2348 | A | 2349 | G | 2350 | * | C | 2359 | A | 2360 | A | 2362 | G | 2364 | cWW | tWH | cWW | tWW | cWW | |
| 3 | J3_4V9F_008 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | C | 2329 | U | 2330 | C | 2331 | * | G | 2355 | A | 2356 | G | 2357 | * | C | 2366 | A | 2367 | A | 2369 | G | 2371 | cWW | tWH | cWW | tWW | cWW | |
| 4 | J3_9DFE_016 | 9DFE | 0.1589 | 2 | 1A | LSU rRNA | C | 2295 | U | 2296 | C | 2297 | * | G | 2321 | A | 2322 | G | 2323 | * | U | 2332 | A | 2333 | A | 2335 | G | 2337 | cWW | tWH | cWW | tWW | cWW | ncSs |
| 5 | J3_8CRE_022 | 8CRE | 0.1736 | 2 | 1 | LSU rRNA | C | 2636 | U | 2637 | C | 2638 | * | G | 2662 | A | 2663 | A | 2664 | * | U | 2673 | A | 2674 | A | 2676 | G | 2678 | cWW | tWH | cWW | ntWW | cWW | |
| 6 | J3_8P9A_062 | 8P9A | 0.1435 | 2 | AR | LSU rRNA | C | 2664 | U | 2665 | C | 2666 | * | G | 2690 | A | 2691 | A | 2692 | * | U | 2701 | A | 2702 | A | 2704 | G | 2706 | cWW | tWH | cWW | tWW | cWW | |
| 7 | J3_7A0S_010 | 7A0S | 0.2670 | 2 | X | LSU rRNA | C | 2274 | U | 2275 | C | 2276 | * | G | 2300 | A | 2301 | G | 2302 | * | U | 2311 | A | 2312 | A | 2314 | G | 2316 | cWW | cWW | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUC*GAG*UAGAAG | 2 |
| CUC*GAA*UAAAAG | 2 |
| CUA*UAG*CAUAAG | 1 |
| CUC*GAG*CAUAAG | 1 |
| CUC*GAG*CAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*A*AAAA | 3 |
| U*A*AUAA | 2 |
| U*A*AGAA | 2 |
- Annotations
-
- (7)
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Heat map statistics
- Min 0.09 | Avg 0.19 | Max 0.30
Coloring options: