J3_5J7L_050

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5J7L|1|AA|C|48, 5J7L|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.1

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

5J7L|1|AA|G|46
5J7L|1|AA|C|47
5J7L|1|AA|C|48
5J7L|1|AA|U|49
5J7L|1|AA|A|50
5J7L|1|AA|A|51
5J7L|1|AA|C|52
*
5J7L|1|AA|G|359
5J7L|1|AA|G|360
5J7L|1|AA|G|361
5J7L|1|AA|G|362
5J7L|1|AA|A|363
5J7L|1|AA|A|364
5J7L|1|AA|U|365
5J7L|1|AA|A|366
5J7L|1|AA|U|367
*
5J7L|1|AA|A|393
5J7L|1|AA|G|394
5J7L|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16