J3_5J7L_051

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGG*CUUGA*UGACG

Length

13 nucleotides

Bulged bases

5J7L|1|AA|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.2

Basepair signature

cWW-tSH-cWW-tHW-cWW-cWW-F

Number of instances in this motif group

7

Unit IDs

5J7L|1|AA|C|586
5J7L|1|AA|G|587
5J7L|1|AA|G|588
*
5J7L|1|AA|C|651
5J7L|1|AA|U|652
5J7L|1|AA|U|653
5J7L|1|AA|G|654
5J7L|1|AA|A|655
*
5J7L|1|AA|U|751
5J7L|1|AA|G|752
5J7L|1|AA|A|753
5J7L|1|AA|C|754
5J7L|1|AA|G|755

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17