J3_5J88_005
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5J88|1|AA|A|975, 5J88|1|AA|G|976, 5J88|1|AA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J88_005 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0507
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5J88|1|AA|U|955
5J88|1|AA|U|956
5J88|1|AA|U|957
5J88|1|AA|A|958
5J88|1|AA|A|959
5J88|1|AA|U|960
5J88|1|AA|U|961
5J88|1|AA|C|962
*
5J88|1|AA|G|973
5J88|1|AA|A|974
5J88|1|AA|A|975
5J88|1|AA|G|976
5J88|1|AA|A|977
5J88|1|AA|A|978
5J88|1|AA|C|979
5J88|1|AA|C|980
5J88|1|AA|U|981
5J88|1|AA|U|982
5J88|1|AA|A|983
5J88|1|AA|C|984
*
5J88|1|AA|G|1221
5J88|1|AA|G|1222
5J88|1|AA|C|1223
5J88|1|AA|U|1224
5J88|1|AA|A|1225
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AJ
- 30S ribosomal protein S10
- Chain AM
- 30S ribosomal protein S13
- Chain AN
- 30S ribosomal protein S14
- Chain AS
- 30S ribosomal protein S19
Coloring options: