J3_5J88_007
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J88_007 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.0652
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5J88|1|AA|C|1063
5J88|1|AA|G|1064
5J88|1|AA|U|1065
5J88|1|AA|C|1066
5J88|1|AA|A|1067
5J88|1|AA|G|1068
*
5J88|1|AA|C|1107
5J88|1|AA|G|1108
5J88|1|AA|C|1109
5J88|1|AA|A|1110
5J88|1|AA|A|1111
5J88|1|AA|C|1112
5J88|1|AA|C|1113
*
5J88|1|AA|G|1187
5J88|1|AA|A|1188
5J88|1|AA|U|1189
5J88|1|AA|G|1190
5J88|1|AA|A|1191
5J88|1|AA|C|1192
5J88|1|AA|G|1193
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AB
- 30S ribosomal protein S2
- Chain AC
- 30S ribosomal protein S3
- Chain AE
- 30S ribosomal protein S5
- Chain AG
- 30S ribosomal protein S7
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
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