J3_5J88_018

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

5J88|1|BA|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J88_018 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.0767

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5J88|1|BA|U|1073
5J88|1|BA|G|1074
*
5J88|1|BA|U|1083
5J88|1|BA|G|1084
5J88|1|BA|U|1085
5J88|1|BA|U|1086
5J88|1|BA|G|1087
*
5J88|1|BA|C|1098
5J88|1|BA|G|1099
5J88|1|BA|C|1100
5J88|1|BA|A|1101
5J88|1|BA|A|1102

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BE

30S ribosomal protein S5