J3_5J88_029

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J88_029 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0696

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5J88|1|CA|C|2091
5J88|1|CA|U|2092
5J88|1|CA|G|2093
*
5J88|1|CA|C|2196
5J88|1|CA|U|2197
5J88|1|CA|A|2198
5J88|1|CA|A|2199
5J88|1|CA|C|2200
*
5J88|1|CA|G|2223
5J88|1|CA|G|2224
5J88|1|CA|A|2225
5J88|1|CA|C|2226
5J88|1|CA|A|2227
5J88|1|CA|G|2228

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28