J3_5J88_039
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J88_039 not in the Motif Atlas
- Homologous match to J3_5J7L_040
- Geometric discrepancy: 0.051
- The information below is about J3_5J7L_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5J88|1|DA|G|1055
5J88|1|DA|G|1056
5J88|1|DA|A|1057
*
5J88|1|DA|U|1081
5J88|1|DA|U|1082
5J88|1|DA|U|1083
5J88|1|DA|A|1084
5J88|1|DA|A|1085
5J88|1|DA|A|1086
5J88|1|DA|G|1087
*
5J88|1|DA|C|1102
5J88|1|DA|A|1103
5J88|1|DA|C|1104
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D5
- 50S ribosomal protein L36
- Chain DI
- 50S ribosomal protein L10
- Chain DJ
- 50S ribosomal protein L11
Coloring options: