J3_5J88_074
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 5J88|1|AA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J88_074 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0598
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5J88|1|AA|U|672
5J88|1|AA|A|673
*
5J88|1|AA|U|717
5J88|1|AA|A|718
5J88|1|AA|C|719
5J88|1|AA|C|720
5J88|1|AA|G|721
5J88|1|AA|G|722
5J88|1|AA|U|723
5J88|1|AA|G|724
5J88|1|AA|G|725
*
5J88|1|AA|C|732
5J88|1|AA|G|733
5J88|1|AA|G|734
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AO
- 30S ribosomal protein S15
- Chain AR
- 30S ribosomal protein S18
- Chain AU
- 30S ribosomal protein S21
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