J3_5J8A_017
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5J8A|1|BA|A|975, 5J8A|1|BA|G|976, 5J8A|1|BA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8A_017 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0174
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5J8A|1|BA|U|955
5J8A|1|BA|U|956
5J8A|1|BA|U|957
5J8A|1|BA|A|958
5J8A|1|BA|A|959
5J8A|1|BA|U|960
5J8A|1|BA|U|961
5J8A|1|BA|C|962
*
5J8A|1|BA|G|973
5J8A|1|BA|A|974
5J8A|1|BA|A|975
5J8A|1|BA|G|976
5J8A|1|BA|A|977
5J8A|1|BA|A|978
5J8A|1|BA|C|979
5J8A|1|BA|C|980
5J8A|1|BA|U|981
5J8A|1|BA|U|982
5J8A|1|BA|A|983
5J8A|1|BA|C|984
*
5J8A|1|BA|G|1221
5J8A|1|BA|G|1222
5J8A|1|BA|C|1223
5J8A|1|BA|U|1224
5J8A|1|BA|A|1225
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BJ
- 30S ribosomal protein S10
- Chain BM
- 30S ribosomal protein S13
- Chain BN
- 30S ribosomal protein S14
- Chain BS
- 30S ribosomal protein S19
Coloring options: