J3_5J8A_049
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5J8A|1|DA|U|2833, 5J8A|1|DA|A|2835, 5J8A|1|DA|U|2884||A, 5J8A|1|DA|G|2885||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8A_049 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.0389
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5J8A|1|DA|G|2812
5J8A|1|DA|A|2813
5J8A|1|DA|A|2814
5J8A|1|DA|C|2815
*
5J8A|1|DA|G|2831
5J8A|1|DA|U|2832
5J8A|1|DA|U|2833
5J8A|1|DA|G|2834
5J8A|1|DA|A|2835
5J8A|1|DA|U|2836
*
5J8A|1|DA|A|2882
5J8A|1|DA|A|2883
5J8A|1|DA|U|2884||A
5J8A|1|DA|G|2885||A
5J8A|1|DA|A|2886||A
5J8A|1|DA|A|2887||A
5J8A|1|DA|C|2888||A
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L32
- Chain DD
- 50S ribosomal protein L3
- Chain DO
- 50S ribosomal protein L17
- Chain DT
- 50S ribosomal protein L22
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