J3_5J8A_058

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8A_058 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0195

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5J8A|1|BA|C|936
5J8A|1|BA|A|937
5J8A|1|BA|A|938
5J8A|1|BA|G|939
*
5J8A|1|BA|C|1344
5J8A|1|BA|U|1345
5J8A|1|BA|A|1346
5J8A|1|BA|G|1347
5J8A|1|BA|U|1348
5J8A|1|BA|A|1349
5J8A|1|BA|A|1350
*
5J8A|1|BA|U|1372
5J8A|1|BA|G|1373
5J8A|1|BA|A|1374
5J8A|1|BA|A|1375
5J8A|1|BA|U|1376
5J8A|1|BA|A|1377
5J8A|1|BA|C|1378
5J8A|1|BA|G|1379

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9