J3_5J8A_066

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5J8A|1|DA|A|504, 5J8A|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8A_066 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0183

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5J8A|1|DA|G|30
5J8A|1|DA|C|31
*
5J8A|1|DA|G|474
5J8A|1|DA|C|475
5J8A|1|DA|G|476
5J8A|1|DA|A|477
5J8A|1|DA|A|478
5J8A|1|DA|A|479
5J8A|1|DA|A|480
5J8A|1|DA|G|481
5J8A|1|DA|A|482
5J8A|1|DA|A|483
5J8A|1|DA|C|484
*
5J8A|1|DA|G|496
5J8A|1|DA|A|497
5J8A|1|DA|G|498
5J8A|1|DA|U|499
5J8A|1|DA|G|500
5J8A|1|DA|A|501
5J8A|1|DA|A|502
5J8A|1|DA|A|503
5J8A|1|DA|A|504
5J8A|1|DA|A|505
5J8A|1|DA|G|506
5J8A|1|DA|A|507
5J8A|1|DA|A|508
5J8A|1|DA|C|509
5J8A|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DR

50S ribosomal protein L20

Chain DT

50S ribosomal protein L22

Chain DV

50S ribosomal protein L24