J3_5J8A_067
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5J8A|1|DA|U|34, 5J8A|1|DA|U|448, 5J8A|1|DA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8A_067 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0218
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5J8A|1|DA|C|32
5J8A|1|DA|C|33
5J8A|1|DA|U|34
5J8A|1|DA|G|35
*
5J8A|1|DA|C|445
5J8A|1|DA|G|446
5J8A|1|DA|A|447
5J8A|1|DA|U|448
5J8A|1|DA|A|449
5J8A|1|DA|G|450
5J8A|1|DA|U|451
5J8A|1|DA|G|452
5J8A|1|DA|A|453
5J8A|1|DA|A|454
5J8A|1|DA|C|455
5J8A|1|DA|C|456
5J8A|1|DA|A|457
5J8A|1|DA|G|458
5J8A|1|DA|U|459
5J8A|1|DA|A|460
5J8A|1|DA|C|461
*
5J8A|1|DA|G|468
5J8A|1|DA|G|469
5J8A|1|DA|A|470
5J8A|1|DA|A|471
5J8A|1|DA|A|472
5J8A|1|DA|G|473
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L34
- Chain DE
- 50S ribosomal protein L4
- Chain DR
- 50S ribosomal protein L20
- Chain DU
- 50S ribosomal protein L23
Coloring options: