J3_5J8B_003

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

5J8B|1|A|U|287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.0508

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5J8B|1|A|U|257
5J8B|1|A|A|258
5J8B|1|A|A|259
5J8B|1|A|A|260
5J8B|1|A|C|261
*
5J8B|1|A|G|281
5J8B|1|A|G|282
5J8B|1|A|G|283
5J8B|1|A|U|284
5J8B|1|A|C|285
5J8B|1|A|G|286
5J8B|1|A|U|287
5J8B|1|A|G|288
*
5J8B|1|A|C|395
5J8B|1|A|G|396

Current chains

Chain A

23S Ribosomal RNA

Nearby chains