J3_5J8B_005

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0527

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5J8B|1|A|C|744
5J8B|1|A|A|745
5J8B|1|A|G|746
*
5J8B|1|A|C|778
5J8B|1|A|G|779
5J8B|1|A|A|780
5J8B|1|A|A|781
5J8B|1|A|C|782
*
5J8B|1|A|G|806
5J8B|1|A|A|807
5J8B|1|A|U|808
5J8B|1|A|G|809

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2