J3_5J8B_006
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAGG*CCUUUAAAG*CAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J8B|1|A|G|1100
5J8B|1|A|G|1101
5J8B|1|A|A|1102
5J8B|1|A|G|1103
5J8B|1|A|G|1104
*
5J8B|1|A|C|1124
5J8B|1|A|C|1125
5J8B|1|A|U|1126
5J8B|1|A|U|1127
5J8B|1|A|U|1128
5J8B|1|A|A|1129
5J8B|1|A|A|1130
5J8B|1|A|A|1131
5J8B|1|A|G|1132
*
5J8B|1|A|C|1147
5J8B|1|A|A|1148
5J8B|1|A|C|1149
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain J
- 50S ribosomal protein L10
- Chain K
- 50S ribosomal protein L11
Coloring options: