J3_5J8B_008
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAG*CGCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 5J8B|1|A|A|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8B_008 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.0406
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J8B|1|A|C|1351
5J8B|1|A|A|1352
5J8B|1|A|A|1353
5J8B|1|A|G|1354
*
5J8B|1|A|C|1650
5J8B|1|A|G|1651
5J8B|1|A|C|1652
5J8B|1|A|A|1653
5J8B|1|A|A|1654
5J8B|1|A|A|1655
5J8B|1|A|C|1656
*
5J8B|1|A|G|1665
5J8B|1|A|U|1666
5J8B|1|A|G|1667
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
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