J3_5J8B_022

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

5J8B|1|a|A|953, 5J8B|1|a|G|954, 5J8B|1|a|A|956

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_022 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0408

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5J8B|1|a|U|933
5J8B|1|a|U|934
5J8B|1|a|U|935
5J8B|1|a|A|936
5J8B|1|a|A|937
5J8B|1|a|U|938
5J8B|1|a|U|939
5J8B|1|a|C|940
*
5J8B|1|a|G|951
5J8B|1|a|A|952
5J8B|1|a|A|953
5J8B|1|a|G|954
5J8B|1|a|A|955
5J8B|1|a|A|956
5J8B|1|a|C|957
5J8B|1|a|C|958
5J8B|1|a|U|959
5J8B|1|a|U|960
5J8B|1|a|A|961
5J8B|1|a|C|962
*
5J8B|1|a|G|1203
5J8B|1|a|G|1204
5J8B|1|a|C|1205
5J8B|1|a|G|1206
5J8B|1|a|A|1207

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S10

Chain m

30S ribosomal protein S13

Chain n

30S ribosomal protein S14 type Z

Chain s

30S ribosomal protein S19

Chain w

Transfer RNA; tRNA