J3_5J8B_024

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAC*GGUGC*GGAGCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8B|1|a|G|981
5J8B|1|a|G|982
5J8B|1|a|A|983
5J8B|1|a|A|984
5J8B|1|a|C|985
*
5J8B|1|a|G|1002
5J8B|1|a|G|1003
5J8B|1|a|U|1004
5J8B|1|a|G|1005
5J8B|1|a|C|1006
*
5J8B|1|a|G|1016
5J8B|1|a|G|1017
5J8B|1|a|A|1018
5J8B|1|a|G|1019
5J8B|1|a|C|1020
5J8B|1|a|C|1021

Current chains

Chain a

16S Ribosomal RNA

Nearby chains