J3_5J8B_027
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 5J8B|1|a|A|1165
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8B_027 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1042
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J8B|1|a|C|1099
5J8B|1|a|G|1100
5J8B|1|a|C|1101
*
5J8B|1|a|G|1138
5J8B|1|a|G|1139
5J8B|1|a|A|1140
5J8B|1|a|C|1141
5J8B|1|a|U|1142
5J8B|1|a|G|1143
5J8B|1|a|C|1144
*
5J8B|1|a|G|1157
5J8B|1|a|A|1158
5J8B|1|a|G|1159
5J8B|1|a|G|1160
5J8B|1|a|A|1161
5J8B|1|a|A|1162
5J8B|1|a|G|1163
5J8B|1|a|G|1164
5J8B|1|a|A|1165
5J8B|1|a|G|1166
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
Coloring options: