J3_5J91_031

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J91_031 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0527

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5J91|1|CA|C|2091
5J91|1|CA|U|2092
5J91|1|CA|G|2093
*
5J91|1|CA|C|2196
5J91|1|CA|U|2197
5J91|1|CA|A|2198
5J91|1|CA|A|2199
5J91|1|CA|C|2200
*
5J91|1|CA|G|2223
5J91|1|CA|G|2224
5J91|1|CA|A|2225
5J91|1|CA|C|2226
5J91|1|CA|A|2227
5J91|1|CA|G|2228

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28