J3_5J91_062

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5J91|1|CA|A|504, 5J91|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J91_062 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0472

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5J91|1|CA|G|30
5J91|1|CA|C|31
*
5J91|1|CA|G|474
5J91|1|CA|C|475
5J91|1|CA|G|476
5J91|1|CA|A|477
5J91|1|CA|A|478
5J91|1|CA|A|479
5J91|1|CA|A|480
5J91|1|CA|G|481
5J91|1|CA|A|482
5J91|1|CA|A|483
5J91|1|CA|C|484
*
5J91|1|CA|G|496
5J91|1|CA|A|497
5J91|1|CA|G|498
5J91|1|CA|U|499
5J91|1|CA|G|500
5J91|1|CA|A|501
5J91|1|CA|A|502
5J91|1|CA|A|503
5J91|1|CA|A|504
5J91|1|CA|A|505
5J91|1|CA|G|506
5J91|1|CA|A|507
5J91|1|CA|A|508
5J91|1|CA|C|509
5J91|1|CA|C|510

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein L20

Chain CT

50S ribosomal protein L22

Chain CV

50S ribosomal protein L24