J3_5J91_063
3D structure
- PDB id
- 5J91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5J91|1|CA|U|34, 5J91|1|CA|U|448, 5J91|1|CA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J91_063 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0834
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5J91|1|CA|C|32
5J91|1|CA|C|33
5J91|1|CA|U|34
5J91|1|CA|G|35
*
5J91|1|CA|C|445
5J91|1|CA|G|446
5J91|1|CA|A|447
5J91|1|CA|U|448
5J91|1|CA|A|449
5J91|1|CA|G|450
5J91|1|CA|U|451
5J91|1|CA|G|452
5J91|1|CA|A|453
5J91|1|CA|A|454
5J91|1|CA|C|455
5J91|1|CA|C|456
5J91|1|CA|A|457
5J91|1|CA|G|458
5J91|1|CA|U|459
5J91|1|CA|A|460
5J91|1|CA|C|461
*
5J91|1|CA|G|468
5J91|1|CA|G|469
5J91|1|CA|A|470
5J91|1|CA|A|471
5J91|1|CA|A|472
5J91|1|CA|G|473
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C3
- 50S ribosomal protein L34
- Chain CE
- 50S ribosomal protein L4
- Chain CR
- 50S ribosomal protein L20
- Chain CU
- 50S ribosomal protein L23
Coloring options: