J3_5JB3_006

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

UUUAAUUG*CGGGAACCUCAC*GGCUA

Length

25 nucleotides

Bulged bases

5JB3|1|2|G|934, 5JB3|1|2|G|935, 5JB3|1|2|A|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|U|914
5JB3|1|2|U|915
5JB3|1|2|U|916
5JB3|1|2|A|917
5JB3|1|2|A|918
5JB3|1|2|U|919
5JB3|1|2|U|920
5JB3|1|2|G|921
*
5JB3|1|2|C|932
5JB3|1|2|G|933
5JB3|1|2|G|934
5JB3|1|2|G|935
5JB3|1|2|A|936
5JB3|1|2|A|937
5JB3|1|2|C|938
5JB3|1|2|C|939
5JB3|1|2|U|940
5JB3|1|2|C|941
5JB3|1|2|A|942
5JB3|1|2|C|943
*
5JB3|1|2|G|1181
5JB3|1|2|G|1182
5JB3|1|2|C|1183
5JB3|1|2|U|1184
5JB3|1|2|A|1185

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S9

Chain L

30S ribosomal protein S10

Chain O

30S ribosomal protein S13

Chain P

30S ribosomal protein S14 type Z

Chain T

30S ribosomal protein S19