J3_5JB3_007

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GCGAC*GAGAG*CGAAAC

Length

16 nucleotides

Bulged bases

5JB3|1|2|A|1172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|G|949
5JB3|1|2|C|950
5JB3|1|2|G|951
5JB3|1|2|A|952
5JB3|1|2|C|953
*
5JB3|1|2|G|995
5JB3|1|2|A|996
5JB3|1|2|G|997
5JB3|1|2|A|998
5JB3|1|2|G|999
*
5JB3|1|2|C|1170
5JB3|1|2|G|1171
5JB3|1|2|A|1172
5JB3|1|2|A|1173
5JB3|1|2|A|1174
5JB3|1|2|C|1175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Translation initiation factor 1A

Chain P

30S ribosomal protein S14 type Z