J3_5JB3_010

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGGG

Length

20 nucleotides

Bulged bases

5JB3|1|2|G|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|C|1068
5JB3|1|2|G|1069
5JB3|1|2|C|1070
*
5JB3|1|2|G|1115
5JB3|1|2|G|1116
5JB3|1|2|A|1117
5JB3|1|2|C|1118
5JB3|1|2|U|1119
5JB3|1|2|G|1120
5JB3|1|2|C|1121
*
5JB3|1|2|G|1135
5JB3|1|2|A|1136
5JB3|1|2|G|1137
5JB3|1|2|G|1138
5JB3|1|2|A|1139
5JB3|1|2|A|1140
5JB3|1|2|G|1141
5JB3|1|2|G|1142
5JB3|1|2|G|1143
5JB3|1|2|G|1144

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain L

30S ribosomal protein S10

Chain S

30S ribosomal protein S17e

Chain X

30S ribosomal protein S28e