J3_5JB3_011

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

5JB3|1|2|U|1200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|C|1197
5JB3|1|2|A|1198
5JB3|1|2|A|1199
5JB3|1|2|U|1200
5JB3|1|2|G|1201
*
5JB3|1|2|C|1256
5JB3|1|2|U|1257
5JB3|1|2|C|1258
5JB3|1|2|A|1259
5JB3|1|2|G|1260
5JB3|1|2|U|1261
5JB3|1|2|U|1262
5JB3|1|2|C|1263
*
5JB3|1|2|G|1294
5JB3|1|2|C|1295
5JB3|1|2|U|1296
5JB3|1|2|G|1297

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain O

30S ribosomal protein S13

Chain U

30S ribosomal protein S19e