J3_5JB3_013

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CAAGG*CCUAGUACC*GCGAAUACG

Length

23 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|C|895
5JB3|1|2|A|896
5JB3|1|2|A|897
5JB3|1|2|G|898
5JB3|1|2|G|899
*
5JB3|1|2|C|1303
5JB3|1|2|C|1304
5JB3|1|2|U|1305
5JB3|1|2|A|1306
5JB3|1|2|G|1307
5JB3|1|2|U|1308
5JB3|1|2|A|1309
5JB3|1|2|C|1310
5JB3|1|2|C|1311
*
5JB3|1|2|G|1331
5JB3|1|2|C|1332
5JB3|1|2|G|1333
5JB3|1|2|A|1334
5JB3|1|2|A|1335
5JB3|1|2|U|1336
5JB3|1|2|A|1337
5JB3|1|2|C|1338
5JB3|1|2|G|1339

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain X

30S ribosomal protein S28e