J3_5JBH_002

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|C|539
5JBH|1|2|G|540
5JBH|1|2|G|541
*
5JBH|1|2|C|605
5JBH|1|2|U|606
5JBH|1|2|U|607
5JBH|1|2|G|608
*
5JBH|1|2|C|708
5JBH|1|2|G|709

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein uS8

Chain N

30S ribosomal protein uS12

Chain Q

30S ribosomal protein uS15

Chain R

30S ribosomal protein uS17

Chain W

30S ribosomal protein eS27