J3_5JBH_003

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GGG*CGCCAGUGG*CGCC

Length

16 nucleotides

Bulged bases

5JBH|1|2|U|677

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|G|625
5JBH|1|2|G|626
5JBH|1|2|G|627
*
5JBH|1|2|C|671
5JBH|1|2|G|672
5JBH|1|2|C|673
5JBH|1|2|C|674
5JBH|1|2|A|675
5JBH|1|2|G|676
5JBH|1|2|U|677
5JBH|1|2|G|678
5JBH|1|2|G|679
*
5JBH|1|2|C|686
5JBH|1|2|G|687
5JBH|1|2|C|688
5JBH|1|2|C|689

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

mRNA

Chain A

30S ribosomal protein uS3

Chain M

30S ribosomal protein uS11

Chain Q

30S ribosomal protein uS15