J3_5JBH_004
3D structure
- PDB id
- 5JBH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.34 Å
Loop
- Sequence
- CUAG*CGUAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5JBH|1|2|U|829, 5JBH|1|2|A|831
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JBH|1|2|C|780
5JBH|1|2|U|781
5JBH|1|2|A|782
5JBH|1|2|G|783
*
5JBH|1|2|C|815
5JBH|1|2|G|816
5JBH|1|2|U|817
5JBH|1|2|A|818
5JBH|1|2|G|819
*
5JBH|1|2|C|826
5JBH|1|2|G|827
5JBH|1|2|U|828
5JBH|1|2|U|829
5JBH|1|2|A|830
5JBH|1|2|A|831
5JBH|1|2|G|832
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 5
- mRNA
- Chain B
- 30S ribosomal protein uS2
- Chain C
- 30S ribosomal protein SX
- Chain I
- 30S ribosomal protein uS8
- Chain N
- 30S ribosomal protein uS12
- Chain Q
- 30S ribosomal protein uS15
- Chain W
- 30S ribosomal protein eS27
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