J3_5JBH_005

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|U|902
5JBH|1|2|G|903
5JBH|1|2|G|904
5JBH|1|2|A|905
*
5JBH|1|2|U|1195
5JBH|1|2|A|1196
5JBH|1|2|C|1197
*
5JBH|1|2|G|1297
5JBH|1|2|G|1298
5JBH|1|2|A|1299
5JBH|1|2|A|1300

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain H

30S ribosomal protein uS7

Chain K

30S ribosomal protein uS9

Chain O

30S ribosomal protein uS13

Chain U

30S ribosomal protein eS19