J3_5JBH_006
3D structure
- PDB id
- 5JBH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.34 Å
Loop
- Sequence
- UUUAAUUG*CGGGAACCUCAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5JBH|1|2|G|934, 5JBH|1|2|G|935, 5JBH|1|2|A|937
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JBH|1|2|U|914
5JBH|1|2|U|915
5JBH|1|2|U|916
5JBH|1|2|A|917
5JBH|1|2|A|918
5JBH|1|2|U|919
5JBH|1|2|U|920
5JBH|1|2|G|921
*
5JBH|1|2|C|932
5JBH|1|2|G|933
5JBH|1|2|G|934
5JBH|1|2|G|935
5JBH|1|2|A|936
5JBH|1|2|A|937
5JBH|1|2|C|938
5JBH|1|2|C|939
5JBH|1|2|U|940
5JBH|1|2|C|941
5JBH|1|2|A|942
5JBH|1|2|C|943
*
5JBH|1|2|G|1181
5JBH|1|2|G|1182
5JBH|1|2|C|1183
5JBH|1|2|U|1184
5JBH|1|2|A|1185
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 6
- aIF1A
- Chain K
- 30S ribosomal protein uS9
- Chain L
- 30S ribosomal protein uS10
- Chain O
- 30S ribosomal protein uS13
- Chain P
- 30S ribosomal protein uS14
- Chain T
- 30S ribosomal protein uS19
Coloring options: