J3_5JBH_007

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GCGAC*GAGAG*CGAAAC

Length

16 nucleotides

Bulged bases

5JBH|1|2|A|1172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|G|949
5JBH|1|2|C|950
5JBH|1|2|G|951
5JBH|1|2|A|952
5JBH|1|2|C|953
*
5JBH|1|2|G|995
5JBH|1|2|A|996
5JBH|1|2|G|997
5JBH|1|2|A|998
5JBH|1|2|G|999
*
5JBH|1|2|C|1170
5JBH|1|2|G|1171
5JBH|1|2|A|1172
5JBH|1|2|A|1173
5JBH|1|2|A|1174
5JBH|1|2|C|1175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

aIF1A

Chain P

30S ribosomal protein uS14