J3_5JBH_008
3D structure
- PDB id
- 5JBH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.34 Å
Loop
- Sequence
- CGUCAG*CGAGACC*GGCGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JBH|1|2|C|1015
5JBH|1|2|G|1016
5JBH|1|2|U|1017
5JBH|1|2|C|1018
5JBH|1|2|A|1019
5JBH|1|2|G|1020
*
5JBH|1|2|C|1059
5JBH|1|2|G|1060
5JBH|1|2|A|1061
5JBH|1|2|G|1062
5JBH|1|2|A|1063
5JBH|1|2|C|1064
5JBH|1|2|C|1065
*
5JBH|1|2|G|1147
5JBH|1|2|G|1148
5JBH|1|2|C|1149
5JBH|1|2|G|1150
5JBH|1|2|A|1151
5JBH|1|2|C|1152
5JBH|1|2|G|1153
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein uS5
- Chain K
- 30S ribosomal protein uS9
- Chain L
- 30S ribosomal protein uS10
- Chain P
- 30S ribosomal protein uS14
- Chain S
- 30S ribosomal protein eS17
- Chain Z
- 30S ribosomal protein uS3
Coloring options: