J3_5JBH_010

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGGG

Length

20 nucleotides

Bulged bases

5JBH|1|2|G|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|C|1068
5JBH|1|2|G|1069
5JBH|1|2|C|1070
*
5JBH|1|2|G|1115
5JBH|1|2|G|1116
5JBH|1|2|A|1117
5JBH|1|2|C|1118
5JBH|1|2|U|1119
5JBH|1|2|G|1120
5JBH|1|2|C|1121
*
5JBH|1|2|G|1135
5JBH|1|2|A|1136
5JBH|1|2|G|1137
5JBH|1|2|G|1138
5JBH|1|2|A|1139
5JBH|1|2|A|1140
5JBH|1|2|G|1141
5JBH|1|2|G|1142
5JBH|1|2|G|1143
5JBH|1|2|G|1144

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein uS7

Chain K

30S ribosomal protein uS9

Chain L

30S ribosomal protein uS10

Chain S

30S ribosomal protein eS17

Chain X

30S ribosomal protein eS28