J3_5JBH_011

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

5JBH|1|2|U|1200

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|C|1197
5JBH|1|2|A|1198
5JBH|1|2|A|1199
5JBH|1|2|U|1200
5JBH|1|2|G|1201
*
5JBH|1|2|C|1256
5JBH|1|2|U|1257
5JBH|1|2|C|1258
5JBH|1|2|A|1259
5JBH|1|2|G|1260
5JBH|1|2|U|1261
5JBH|1|2|U|1262
5JBH|1|2|C|1263
*
5JBH|1|2|G|1294
5JBH|1|2|C|1295
5JBH|1|2|U|1296
5JBH|1|2|G|1297

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein uS7

Chain O

30S ribosomal protein uS13

Chain U

30S ribosomal protein eS19