J3_5JBH_014

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

UAC*GCGUCC*GGUAA

Length

14 nucleotides

Bulged bases

5JBH|1|2|A|1053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|U|1025
5JBH|1|2|A|1026
5JBH|1|2|C|1027
*
5JBH|1|2|G|1034
5JBH|1|2|C|1035
5JBH|1|2|G|1036
5JBH|1|2|U|1037
5JBH|1|2|C|1038
5JBH|1|2|C|1039
*
5JBH|1|2|G|1050
5JBH|1|2|G|1051
5JBH|1|2|U|1052
5JBH|1|2|A|1053
5JBH|1|2|A|1054

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

mRNA

Chain B

30S ribosomal protein uS2

Chain F

30S ribosomal protein uS5

Chain S

30S ribosomal protein eS17