J3_5JBH_015

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CAA*UAGUACC*GCGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|C|895
5JBH|1|2|A|896
5JBH|1|2|A|897
*
5JBH|1|2|U|1305
5JBH|1|2|A|1306
5JBH|1|2|G|1307
5JBH|1|2|U|1308
5JBH|1|2|A|1309
5JBH|1|2|C|1310
5JBH|1|2|C|1311
*
5JBH|1|2|G|1331
5JBH|1|2|C|1332
5JBH|1|2|G|1333
5JBH|1|2|A|1334
5JBH|1|2|A|1335
5JBH|1|2|U|1336
5JBH|1|2|A|1337
5JBH|1|2|C|1338
5JBH|1|2|G|1339

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein uS7

Chain K

30S ribosomal protein uS9

Chain X

30S ribosomal protein eS28