J3_5JC9_017
3D structure
- PDB id
- 5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.03 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5JC9|1|BA|A|975, 5JC9|1|BA|G|976, 5JC9|1|BA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JC9_017 not in the Motif Atlas
- Geometric match to J3_5J7L_006
- Geometric discrepancy: 0.0381
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5JC9|1|BA|U|955
5JC9|1|BA|U|956
5JC9|1|BA|U|957
5JC9|1|BA|A|958
5JC9|1|BA|A|959
5JC9|1|BA|U|960
5JC9|1|BA|U|961
5JC9|1|BA|C|962
*
5JC9|1|BA|G|973
5JC9|1|BA|A|974
5JC9|1|BA|A|975
5JC9|1|BA|G|976
5JC9|1|BA|A|977
5JC9|1|BA|A|978
5JC9|1|BA|C|979
5JC9|1|BA|C|980
5JC9|1|BA|U|981
5JC9|1|BA|U|982
5JC9|1|BA|A|983
5JC9|1|BA|C|984
*
5JC9|1|BA|G|1221
5JC9|1|BA|G|1222
5JC9|1|BA|C|1223
5JC9|1|BA|U|1224
5JC9|1|BA|A|1225
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BJ
- 30S ribosomal protein S10
- Chain BM
- 30S ribosomal protein S13
- Chain BN
- 30S ribosomal protein S14
- Chain BS
- 30S ribosomal protein S19
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